Research group

BiOmics

Bar coded DNA sample

Technological advances have allowed scientists to gather large amounts of data about a vast array of species, organisms and single cells. Our researchers are using mathematical modelling, machine learning and other algorithms to extract information and patterns from large data sets to further our understanding of disease.

About

Contemporary scientific research benefits from rapid technological developments that enable the characterisation and quantification of biological molecules at unprecedented scale. Scientists can generate vast data that provide insight into the complex interplay of molecules within organisms. Interrogation and interpretation of these data inform the structure, function and interaction of molecules over time. 

We use ‘Omic technologies comprehensively to evaluate DNA (genomics), RNA (transcriptomics) and proteins (proteomics). We study small molecules using metabolomics. Microorganisms are investigated in a targeted manner using microbiomics or more broadly to characterise mixed samples using metagenomics.

At the University of Southampton, we generate vast datasets using these approaches across a wide range of environments and species. We work closely with NHS partners to use these capabilities to understand human disease and inform its clinical management. We bring together medical and biological scientists with mathematicians, computer and data scientists to develop and apply methods that exploit these data to their fullest potential.

From analysing patient genomes, to carrying out metagenomic analysis of water samples to using mass spectrometry metabolic profiling techniques, our scientists are studying the unique processes that take place within cells that can lead to disease or poor health outcomes in humans and help track changes in the environment.   

We are using data to answer clinical questions in areas such as cancer, autoimmune and respiratory diseases with the help of clinical colleagues we are translating our findings into novel techniques for clinicians to treat their patients, make predictions about prognosis and drug responsiveness.

Our researchers collaborate with partners at:

People, projects and publications

People

Professor Adam Prugel-Bennett

Prof of Electronics & Computer Science
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Dr Adriana Wilde PhD

Lecturer

Research interests

  • Safe, inclusive, and secure digital technologies for health to empower people to live independently

Accepting applications from PhD students

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Dr Afaf El-Sagheer

Lecturer in Chemistry

Accepting applications from PhD students

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Professor Age Chapman

Professor of Computer Science
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Dr Al Edwards

Associate Professor

Research interests

  • Affordable microfluidic diagnostics and "µMicro" miniaturised microbiology
  • Engineering next generation vaccines: formulation and function

Accepting applications from PhD students

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Professor Alain Zemkoho

Professor of Mathematical Optimization

Research interests

  • Bilevel and hierarchical optimization
  • First and second order numerical methods for continuous optimization
  • Nonsmooth and nonconvex optimization

Accepting applications from PhD students

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Professor Alan Marchant

Professorial Fellow-Education

Research interests

  • My previous research interests centred on the role of auxin transport in plant development and the synthesis and function of the plant cell wall. I use my experience in these research areas to inform the teaching that I deliver.
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Dr Alessio Bellato Ph.D., MSc, BSc, FHEA, PGCHE

Lecturer

Research interests

  • Emotion regulation and dysregulation
  • Psycho-physiology (e.g., heart rate variability)
  • Neurodevelopmental conditions (e.g., ADHD, autism)

Accepting applications from PhD students

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Dr Alex Couto Alves

Senior Lecturer in Statistical Genomics
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Professor Alex Dickinson

Professor

Accepting applications from PhD students

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We are at a very exciting time in Life Science Research. The potential for novel discovery using ‘omics technologies combined with the computer science methodologies is immense.
Professor of Genomics

Related research institutes, centres and groups

Related research institutes, centres and groups

Contact us

Contact us

Contact the Institute for Life Sciences team by emailing: