Research group

BiOmics

Bar coded DNA sample

Technological advances have allowed scientists to gather large amounts of data about a vast array of species, organisms and single cells. Our researchers are using mathematical modelling, machine learning and other algorithms to extract information and patterns from large data sets to further our understanding of disease.

About

Contemporary scientific research benefits from rapid technological developments that enable the characterisation and quantification of biological molecules at unprecedented scale. Scientists can generate vast data that provide insight into the complex interplay of molecules within organisms. Interrogation and interpretation of these data inform the structure, function and interaction of molecules over time. 

We use ‘Omic technologies comprehensively to evaluate DNA (genomics), RNA (transcriptomics) and proteins (proteomics). We study small molecules using metabolomics. Microorganisms are investigated in a targeted manner using microbiomics or more broadly to characterise mixed samples using metagenomics.

At the University of Southampton, we generate vast datasets using these approaches across a wide range of environments and species. We work closely with NHS partners to use these capabilities to understand human disease and inform its clinical management. We bring together medical and biological scientists with mathematicians, computer and data scientists to develop and apply methods that exploit these data to their fullest potential.

From analysing patient genomes, to carrying out metagenomic analysis of water samples to using mass spectrometry metabolic profiling techniques, our scientists are studying the unique processes that take place within cells that can lead to disease or poor health outcomes in humans and help track changes in the environment.   

We are using data to answer clinical questions in areas such as cancer, autoimmune and respiratory diseases with the help of clinical colleagues we are translating our findings into novel techniques for clinicians to treat their patients, make predictions about prognosis and drug responsiveness.

Our researchers collaborate with partners at:

Research highlights

People, projects and publications

People

Professor Tomas Polcar

Professor of Materials Sci and Tribology
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Professor Tracey Newman

Professor

Research interests

  • The demographic of populations worldwide is changing. People are living longer but with more years with affected by disability in the last two decades of life. The societal and economic consequences of this change are not being well managed. There is a lag in the development of health interventions and a need for rapid learning for future health and infrastructure planning. Typically, people in poorer economic situations are disproportionately affected by disability in later life.
  • Hearing loss and dementia: I lead multidisciplinary research focussed on hearing loss, the use of cochlear implants to restore hearing in otherwise deaf people and the interaction between hearing loss and dementia.
  • My focus is understanding cellular mechanisms in these conditions and also how the learning and methodologies used to investigate this can be applied across discipline boundaries. I am driving the implementation of data science methodologies for improved management of people who hear with cochlear implants and for the identification of early indicators of cognitive decline. I am championing the engagement of patients in research and as ambassadors to increase awareness of healthcare interventions amongst hard to reach and marginalised communities.

Accepting applications from PhD students

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Dr Tracy Melvin

Associate Professor
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Dr Valentina Cardo

Associate Professor

Research interests

  • Valentina's research interests include:
  • The relationship between citizenship and identity;
  • Political representation;

Accepting applications from PhD students

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Dr Valerie Brandt

Associate Professor
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Dr Veronica Zamora-Gutierrez

Lecturer in Ecology

Research interests

  • Biodiversity
  • Global Change and Conservation
  • Ecosystem Services

Accepting applications from PhD students

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Dr Vicky Dominguez Almela

Lecturer

Research interests

  • My work includes the use of individual-based models (IBMs), geographical information systems (GIS) and stable isotopes to increase understandings of invasion patterns and evaluate invasive species eradication programmes. I also use citizen science tools to co-produce knowledge with the general public and increase adaptation pathways to biological invasions.
  • I have mainly work with fish in the past, but recently I have been fascinated by the invasion of the brown pelagic seaweed called sargassum.

Accepting applications from PhD students

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Professor Vincent O'connor

Professor of Neurochemistry

Research interests

  • Molecular mechanism of synaptic function and dysfunction
  • Synaptic degeneration
  • Genetic models of synaptic and neuronal dysfunction

Accepting applications from PhD students

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Dr Violetta Sagun

Senior Research Fellow

Research interests

  • Neutron stars
  • Dark matter
  • Binary neutron star mergers
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Professor Vladimir Jiranek

Professor

Research interests

  • Microbiology of beverage fermentations 
  • Cell-cell interations and filamentous/invasive growth in yeast
  • How has yeast evolved to survive in nature and interact with insects 

Accepting applications from PhD students

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Sarah Ennis
Professor of Genomics
We are at a very exciting time in Life Science Research. The potential for novel discovery using ‘omics technologies combined with the computer science methodologies is immense.

Related research institutes, centres and groups

Related research institutes, centres and groups

Contact us

Contact us

Contact the Institute for Life Sciences team by emailing: